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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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Viruses Reprogram Cells into Different Virocells
In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … to the public in a highly-cited 2006 publication in the journal Science . This provided a framework essential to … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … a vision for future technical JGI directions for DOE User science. … Complete Publications Genomic Technologies …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … that would allow users to simultaneously run several programs for RNA-Seq assembly to determine which is best for …
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Busting the Unbreakable Lignin
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and … for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell … of Energy (DOE) Joint Genome Institute (JGI)*, a national user facility located at Lawrence Berkeley National …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more … … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … Fungal Datasets …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate … the previous year and continue working on their research project! The JGI-UC Merced internship program was founded in …
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Effects of Polar Light Cycle on Microbial Food Web
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Streamlining Regulon Identification in Bacteria
… which combines an in vitro transcription assay with RNA sequencing, they were able to identify the target genes … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …
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Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol▿ †
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