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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output … (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make products …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This … streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has extensive experience in …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number … Mers — While biologists were out sampling Lake Mendota in their boats, data scientists and software developers at the …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … Johns Hopkins University; Ph.D. in Bioengineering, Arizona State University …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … California State University campuses for biotechnology education as part of a course-based undergraduate resource …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional … called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) …
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Nikos Kyrpides
… at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the Carnegie … tolerance, and the mechanisms by which plants interact with their microbiomes. In addition, his group conducts …
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Statement on the Use of Genomics Data
… Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … approved JGI user projects to publish the primary report of their data without concern of preemption by others. NCBI … comes first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of studying … well as a recent discovery that turns scientific presumption on its head and opens up a new avenue to explore for efficient biofuel production. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks … images in many regions due to more extreme weather events such as heat waves, droughts and floods. The planet’s … Half a billion people consider sorghum a staple food in their diet, and the Department of Energy (DOE) also …
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Cracking the Secrets of the Diatom’s Shell
… opals” because of the strange, beautiful properties of their silica shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and Kris Niyogi, …
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