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JGI Scientists Pen Genome Watch Articles
… “Given the great expertise in microbial genomics and metagenomics of the microbiology-focused groups at the Joint … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene …
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JGI@25: Solving the Mystery of the Missing Oil
Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab … described the early efforts in his keynote talk at JGI’s 2011 Annual Genomics of Energy & Environment Meeting: “What we …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights … Office of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and … Symposium and for the JGI Annual Meeting closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less …
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Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System
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A bacterial metapopulation adapts locally to phage predation despite global dispersal
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Global overview and major challenges of host prediction methods for uncultivated phages
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Identification of over ten thousand candidate structured RNAs in viruses and phages
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What Happens Underground Influences Global Nutrient Cycles
… and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … in a high-altitude watershed soil ecosystem. Microbiome 11, 237 Roux et al., 2023. iPHoP: An integrated machine … Giant virus diversity and host interactions through global metagenomics. Nature 578, 432–436. … DOE BER Early Career …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
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