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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … observations regarding the contributions of algae and viruses to the ecosystem were noted, but require further …
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Evolutionary instability of CUG-Leu in the genetic code of budding yeasts
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What Happens Underground Influences Global Nutrient Cycles
… and bioproducts, Biogeochemistry, and Inter-organismal interactions. Algal research features prominently among the … reaction networks, and also assessing the role of viruses in the soil microbiome. Another accepted proposal in … particularly, what happens in the rhizosphere where plants, microbes and soil interact below the ground, influencing the …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or water. Later, their …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of …
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Biochemical characterization of xyloglucan galactosyltransferases MUR3 and XLT2 from Spirodela polyrhiza
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … which can affect pathogenic and symbiotic bacterial interactions with animals and plants, or cause metal … also regulates enzymes involved in cellulose production in microbes, these biosensors may eventually lead to ways to …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was … the roles of microbial communities in carbon cycling, in interactions with plants, and as drivers of methane …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … Danforth Plant Science Center, where his group focuses on interactions underlying plant adaptation in different … and evolution, he helps manage the Bacterial-Fungal Interactions Science Focus Area. He has partnered with the …
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Emiley Eloe-Fadrosh
… Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … interns Brandon Barana Mentor: Zhong Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for … Mentor: Yumary Vasquez Project:  AI Agent for Giant Virus Research Mohammad Abdulqader Mentors: Andrei …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … , is recognized as a mutualist, where both species of organism benefit from association, but was predicted to … fungal-bacterial relationships can shed light on how these interactions influence lipid production in Mucoromycotina …
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