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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high … Winner” — “Piggyback the Winner.” In the microbial mat, the data suggest viruses are indeed piggybacking their hosts. … terrestrial environment with low mobility. The metagenomic data suggests that viruses don’t diffuse well through the …
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iPHoP: A Matchmaker for Phages and their Hosts
… used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … and Adam Healey, two of the co-first authors, led the data analyses and assembled the green millet “pan-genome” (a … hudsonalpha.org. … Reference genome of Setaria viridis … Datasets …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … same route. “It was really amazing how the quality of the data improved thanks to that massive amount of new genomes,” … . … 1000 Fungal Genomes Project on Mycocosm … Datasets …
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JGI-KBase Panel at SACNAS
… to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been … that makes it really challenging to actually interpret the data. And so we've been able to get these-- DAN: In terms of …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, … he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       Click here to watch a video …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … Frontiers in Bioengineering and Biotechnology. 11. 2023 Liu et. al., Bacterial genome editing by coupling …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … screens for characterization of new enzymes and use the data we generated to train machine learning models now …
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John Vogel
Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and … alkane-oxidizing archaea. They used IMG because the database already contains metagenome datasets from a variety …
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Game On: High School Students Drive Everglades Metagenomics Study
… through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … to come up with a sense of what to focus on. With so much data and a lack of experience, this added a layer of … project. They had learned many statistical tests for raw data and how to use some bioinformatics tools for analysis …
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