Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
Results
MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences
gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria
Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
