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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to include basal metazoans and … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify variations of essential genes in … that were missed using traditional approaches. This novel form of intermediate expression, when used in addition to …
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Cultivating Symbiotic Antarctic Microbes
… are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and ‘omics … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate … analyses. The species harbors genes encoding SPEARE proteins—which contain  s erine  p roteas e ,  a dhesion …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … natural sampling and field experiments due to its potential for habitat restoration and as a feedstock for biomass-based …
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Boosting Small Molecule Production in Super “Soup”
… walls they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… human chromosomes: Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which contains about … race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … genomes. She has appeared on the annual Highly Cited Researchers list assembly by Clarivate Analytics. In 2020, she … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective … , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how …
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Nikos Kyrpides
Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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