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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers … been  published in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to … a genome has been compared to putting together a puzzle without necessarily knowing the final image. In contrast, …
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THE Bioenergy Tree
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … groups joined the project to contribute to the data for six new species. I must mention that some of the members from … JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the under-sampled …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and … Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, … Department of Energy’s Office of Energy Efficiency and Renewable Energy under Agreements NL0032266. Funding for open …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and … sprung up in almost all branches of eukaryotes (organisms with a nucleus). In part because of this evolutionary … Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, …
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. Many microorganisms hold clues to processes like biodegradation, with potential …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … unique challenges for the community. JGI is partnering with NVIDIA and Oak Ridge National Laboratory (ORNL) to make … assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …
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Extracting the Secrets of Secondary Metabolites
… payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers with a powerful addition to their toolkit to study gene … luminescens and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly …
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Help from Citrus’ Bitter, Hardier Cousin
… for  Citrus , appeals in other ways. It better tolerates cold, withstands pests, and, especially tantalizing, resists a …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … production. Building on the framework provided by our new switchgrass manuscript , we plan to use existing data as … taxa) are faced with pronounced environmental fluctuations. New findings from this line of research combined with past …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  … that I’ve been in my PhD program, I’ve been really focused with academia. And so this was the first time I was …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… be engineered. “Piloting access to this emerging technology with JGI users will enable us to assess CRAGE’s impact, … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in … Instead of only accommodating one DNA insertion, the new system, CRAGE-Duet, can accommodate two DNA constructs, …
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