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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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A single-base resolution map of an archaeal transcriptome
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Streamlining Regulon Identification in Bacteria
… genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. … assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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A Collaboration to Improve Plant Genome Annotations Across Species
… transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … groups joined the project to contribute to the data for six new species. I must mention that some of the members from … of a single lab. Growing different species poses significant challenges, as establishing standardized growth …
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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on … the Phytozome Plant Genomics web portal. … BS in Physics, New York University, NY M.S in Physics, Cornell University, … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Enlarging Windows into Understanding Gene Functions
… for the absence of all the other letters of the alphabet. Yet the specific sequence of these four letters … (Berkeley Lab). And one of the tools that researchers can apply to study the transcription factors that control … factors have been repurposed during evolution to control new functions,” O’Malley said. “Combining the two approaches …
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The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics
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The Expanding Universe of Methane Metabolisms in Archaea
… and short-chain alkane-oxidizing archaea. They used IMG because the database already contains metagenome datasets … “There is evidence that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 … of this metabolism to geochemical data, which in turn can help to understand its impact on climate along earth …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s …
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