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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … This trait would be beneficial for reproduction of improved heterozygous clones through seed. Eric Wommack of …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … Bushnell Project:  Machine Learning Applications in Gene Annotation Masato Terasaki Mentor: Yumary Vasquez Project:  …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … development, and researchers found that ethanol treatment improved fluorescence signals without hampering subsequent …
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