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Biology of Fungi and Their Bacterial Endosymbionts
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Aerobic bacterial methane synthesis
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of viruses impact … target specific microbes or change the behavior of this bacteria — most likely there is a virus that is already …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome …
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Linking microbial Sphagnum degradation and acetate mineralization in acidic peat bogs: from global insights to a genome-centric case study
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Extracting the Secrets of Secondary Metabolites
… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … pest control. Secondary metabolites are highly regulated in bacteria, making it difficult to identify which pathway … could potentially allow for introducing CRISPR into other bacteria, thereby enhancing the scientific community’s …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: … smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their derivatives … Analytics 2020 van Niel International Prize for Studies in Bacterial Systematics 2020 Elected fellowship in the … (MISAG) and a metagenome- assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology 35, 725-731. …
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Genomic features of bacterial adaptation to plants
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