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Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms
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Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper understanding of fundamental aspects of fern … in the land plant tree of life. Ultimately, the resulting comparative framework can inform the efficient production of …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple … developed symbiotic relationships, and how the mutualistic associations allow host plants, such as candidate  bioenergy … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically … oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi … the JGI-EMSL Collaborative Science Initiative and used resources at the DOE Joint Genome Institute and the …
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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
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Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what … their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic … answer is no. They refer to the infected microbial cells as virocells, a change in name first described in 2011 which … Researchers have the opportunity to combine the power of genomics and molecular characterization offered at multiple …
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the … Nature Genetics 46: 707-713. Paterson, AH et al. 2012. Repeated polyploidization of Gossypium genomes and the …
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Localization and regulation of mouse pantothenate kinase 2
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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