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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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Patterns of genomic variation reveal a single evolutionary origin of the wild allotetraploid Mimulus sookensis
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Ten Pressing Questions (and Answers) About Marine Fungi and Opportunities for Collaborations in the Ocean Sciences
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize gene … DSM12444 transcription factors." Microbiology Resource Announcements 14, no. 8 (2025): e00260-25. Cassol, …
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Doubling Down on Known Protein Families
… that single beam. When it comes to microbial communities, scientists have historically been unable to see beyond the … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Mapping the Earth’s Hidden Fungal Kingdom
… past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of … crucial but uncharacterized functions. The challenge facing scientists is both logistical and analytical. How can the …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification
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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP‐TF and determination of its transcriptional effect
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