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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few different ways they're working to …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal … data from that study is now used across California State University campuses for biotechnology education as part of a … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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Boosting Small Molecule Production in Super “Soup”
Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and Michael Jewett of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … paper is the first result of the collaboration with the JGI, where they are partnering with Yasuo Yoshikuni and Ian …
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Accelerating Metagenomics Discoveries with Deep Learning
… the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free … (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin metagenomic contigs …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of seed plants and ferns. The genome is available on the JGI’s plant portal, Phytozome . Researchers hope to have … to Z.-H.C.). B.A.A. and D.W.S. acknowledge funding for this project from the Ambrose Monell Foundation. … Ceratopteris …
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Filling in the Plant Tree of Life
… are from narrow swaths of the plant tree of life. One project aims to change that. …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence … and environmental challenges.   Mission  The mission of the JGI is to provide the global research community with access …
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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of …
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Gotta Catch 'Em Gall
In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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Environmental Genomics Group
Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … Biotechnology Training Program (NIH 5 T32 GM008349) at the University of Wisconsin – Madison. This work was also …
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