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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … capabilities for DOE mission questions. One of the  first papers ever applying single-transcriptomics to plant …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … A., Plott, C., MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of … roles in carbon and other nutrient cycles. “This is the first study to take a more global look at giant viruses by … metagenome datasets generated from sampling sites around the world, including data from several DOE-mission …
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2021 Progress Report
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … call for proposals . The proposal call is open year-round, but proposals submitted by July 30 will be included … a University of Texas at Austin professor, “but we really first heard about the JGI synthesis grant during a …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with genetic …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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