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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … outlined in the journal  Nucleic Acids Research in November 2022.  One of GOLD’s strengths has been implementing …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or a cane, but only Waldo will have … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving …
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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … involving methyl-coenzyme M reductase (MCR), the final step in methanogenesis, or MCR-like complexes, likely …
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Functional Diversity of Diterpene Synthases in the Biofuel Crop Switchgrass
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Functionally conserved enhancers with divergent sequences in distant vertebrates
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Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti
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A Functional Mini-Integrase in a Two-Protein Type V-C CRISPR System
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Mutant phenotypes for thousands of bacterial genes of unknown function
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Raman-based sorting of microbial cells to link functions to their genes
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