Results

Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Products
… ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Metagenome Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of Microbial Metabolism in Model …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Nikos Kyrpides
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global …
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Accelerating Metagenomics Discoveries with Deep Learning
… but computationally costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance …
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Yasuo Yoshikuni
Discovering untapped biochemistry in microorganisms from hidden corners. Nature Review Microbiology , 2022 DeMirci et …
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