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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
And EcoFABs also work well in the classroom. This episode, we visit Los Medanos Community College to see …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be required for …
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THE Bioenergy Tree
… them tantalizing plants to harness for bioenergy. In this episode, hear from Oak Ridge National Laboratory scientists …
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Work With the JGI! Tips for a Winning CSP Proposal
… up – in January, March, and later on in the spring. In this episode, hear proposal tips from Tanja Woyke, who runs user …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … the goal is to create an entirely human-generated yeast genome. …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated …
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … interactive browser – contains the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 million … Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture National …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and … These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). …
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Fungus Fuels Tree Growth
… elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying organic matter, or … and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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