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Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs Deputy … to develop guidelines and best practices for defining virus data quality. Reported in Nature Biotechnology, the work …

… quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Brachypodium distachyon on Phytozome Data Portal …

… fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the … the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia Ivanova and Rekha …

Metagenomic datasets could help map out microbial diversity hotspots … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

They are abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search …

… isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be … for funding L.A. … Arabidopsis thaliana on MycoCosm data portal … Differentiating friends from foes in the …

… sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  … . … Phakopsora pachyrhizi on MycoCosm Data Portal …

… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … are often less diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was …

… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …