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Gut Fungi: Unexpected Source of Novel Chemicals
… natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …
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High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
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Uncovering Novel Genomes from Earth’s Microbiomes
… and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out … Adding Value Beyond Genome Sequences Much of the data had been generated from environmental samples  … Eloe-Fadrosh noted that it was a nice example of “big-data” mining to gain a deeper understanding of the data and …
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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, …
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2023 Progress Report
… we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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Trent Northen
… Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  …
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10 From JGI on the 2019 Highly Cited Researchers List
… Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … to develop guidelines and best practices for defining virus data quality. Reported in Nature Biotechnology, the work … source, methods of identification of the virus genome, and data quality. Go here to learn more about the project. …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific enough for … from their soil samples. This gene expression dataset was particularly important for characterizing fungal …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … screens for characterization of new enzymes and use the data we generated to train machine learning models now …
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