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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Individual genome assembly from complex community short-read metagenomic datasets
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Learning to Look
Machine learning approach significantly expands inovirus … the way we currently isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on … as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic … can fix carbon dioxide replaced organic matter scavengers. This preliminary model aligns with several other studies on …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are … can be further explored for novel functions. In the current study, the team combined the CETCH cycle with a … by July 30, 2020 will be considered in the next review. … This work was supported by the Max Planck Society …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even … temperatures characteristic for polar oceans. In this study, they’ve cracked open the genome of another polar … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… that included Susannah Tringe and Tanja Woyke, were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the October issue of Nature, the study highlights the vast functional diversity of microbes …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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