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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced genome, and these gardens allow …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking … the key physiological factors that trigger forest mushrooms with diverse trophic modes to convert from vegetative …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle …
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Ancient Algae Reveal Secrets of Plant Evolution
… resilient crop varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … land plants. Researchers identified key genes associated with stress responses and compared them with those found in …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more …
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Yasuo Yoshikuni
… has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the Synthetic Biology … for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer … Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … tend to be dominated by prokaryotes (microorganisms without a defined nucleus). Colder waters nearer the poles, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through … features prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four proposals …
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Learning to Look
… distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … or phages called inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic …
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Open Frameworks Training the Next Generation of Scientists
… for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership … faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE … microbiome data. Undergraduate educators are partnering with the JGI and KBase to tap into their existing …
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Fishing for Novel Cellulose Degraders
… of equipment for fly fishing is a boxful of lures. Designed with feathers or wires to mimic an insect or a particular … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Using a single-cell screen, they can now identify microbes with specific functional characteristics. When they tested …
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