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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … them. Based on data reported in the April issue of Soil Biology and Biochemistry , the team found that fungi are … nitrogen and using it as an energy source. No fungi are known to be able to do this. JGI and EMSL’s contributions …
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JGI on the 2021 Highly Cited Researchers List
… of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an … viruses, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity … seminars focus on experimental innovations, computational advances, and other technological developments that will …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … pressure on retaining the flagellum in the terrestrial ecosystems. Unfortunately, neither paper was able to resolve … and that the first terrestrial fungi predate the oldest known fossil record of land plants and evolved in early …
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Data Policy
… : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … in which data is publicly visible and available in JGI systems. Users not involved with the proposal under which … In past data policies, data were publicly visible in JGI systems only but use-restricted until publication by PIs or …
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Better Genome Editing for Bioenergy
… lipid production. These insights into  Y. lipolytica biology and lipid metabolism furthers the U.S. Department of … They identified four genes, including one with no prior known function. The project’s success demonstrates how to …
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Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
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Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil
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Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)
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Integrating Experimentation with Data
… include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled laboratory automation, data … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at no cost. The …
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Simon Roux
… analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this … of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., …
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