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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … platform. Eloe-Fadrosh noted that it was a nice example of “big-data” mining to gain a deeper understanding of the data … out to more than 200 researchers around the world in accordance with the JGI data use policy. “I felt it is …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … to the atmosphere. Peat bogs also serve the ecosystem by minimizing flood risks and filtering water. Peat formed … HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … was primarily on how plants interpret different light cues by altering their growth program, and on how plants … Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum … of scientists made an ambitious plan to begin to link the plant’s varying traits — height, biomass, hardiness to cold, …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular … to include in vitro protein-based techniques, algae, and plants, while focusing on understanding the evolution and … (2022). Gallaher S, Craig R, Ganesan I, Purvine S, McCorkle SR, Grimwood J, Strenkert D, Davidi L, Roth MS, …
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Microbial Genomics & Metagenomics (MGM) Workshop
… designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for … sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Chapter Twelve Genomics for Key Players in the N Cycle From Guinea Pigs to the Next Frontier
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … were found in diverse habitats including the air, plant rhizosphere, wastewater, and even animal and human …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, …
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