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A Collaboration to Improve Plant Genome Annotations Across Species
… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, … included datasets from two species, one of which is sweet sorghum Rio from a JGI Community Science Program project and …
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The International Virus Bioinformatics Meeting 2020
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Boosting Small Molecule Production in Super “Soup”
… to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by … and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, a key platform organism that has been used historically for making …
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ORT: A workflow linking genome-scale metabolic models with reactive transport codes.
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … ecologically relevant species. Another focus area was inter-organismal interactions, and two fungal proposals focus on … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a remarkable opportunity to … the terrestrial-marine interface, which at a larger scale may be applicable towards carbon, and especially methane, …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying organic matter, or as an endophyte, living between a plant’s … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of … environments. It also shows how environmental conditions may affect metabolic activity of microbiomes. This is key …
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Promoting the Power of Viral Metagenomics
… have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like bacteria, this … of important questions such as which organisms the viruses may be targeting or infecting, how well the targeted …
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Boosting Small Molecule Production in Super “Soup”
… to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by … and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, a key platform organism that has been used historically for making …
Learn more
From Berkeley to Binghamton: Tracking Strawberry Evolution
… and researchers predict how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Philympics 2021: Prophage Predictions Perplex Programs
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