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The Busy World of Deep Sea Eruptions
Emily St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how …
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I-Min (Amy) Chen
… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … rich annotations and metadata. Nucleic acids research Jan 2024 Chen IA, Markowitz V, Szeto E, Palaniappan K, and Chu …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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Optimizing de novo genome assembly from PCR-amplified metagenomes
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Identifying the Microbial Cleanup Crew at a Superfund Site
The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a Superfund … Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is …
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JGI at the AGU Fall Meeting
… of interest (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and Resources, Open-Call …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate bioenergy … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Supercharging SIP in the Fungal Hyphosphere
… have successfully automated aspects of a commonly-used process for studying microbial communities, with … The Impact Stable isotope probing is a long and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live in complex …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… between DOE JGI and UC Merced to promote diversity and inclusion in science and research, two undergraduate students … at UC Merced. Cristhian and Bryan both spoke briefly about their internship experiences at the DOE JGI – revisit … . Additionally, Bryan was featuring in a video about the importance of mentoring with Tanja Woyke and her …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … the “dark” functional realm. Their focus sharpened on deciphering the intricate world of protein functional … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes …
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … of RIViT-seq to other transcription factors and even other organisms can fuel a deeper understanding of these …
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