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Persistent memory as an effective alternative to random access memory in metagenome assembly
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Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability
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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Metagenomics Reveal Dynamic Coastal Ocean Reservoir of Antibiotic Resistance Genes
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Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie ‘dead zone’
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … To search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … Laccaria bicolor on MycoCosm … Laccaria bicolor has a symbiotic relationship with poplar …
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