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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … undergo technical review by JGI staff as well as staff at the other participating facilities, who consider …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Community Science Program
… Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … technical review by JGI staff, while the DOE ensures that they meet DOE mission relevance .  During scientific peer …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic … Antarctic lakes, some of which have salinities 10 times that of seawater. To shed light on the global biogeography in … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … which sgRNA sequences were reliable. In an elegant, quantitative screen, the team designed a pool of sgRNA …
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
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Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
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High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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