The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
Results
Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
User Science
DOE JGI Metagenome Workflow
Philympics 2021: Prophage Predictions Perplex Programs
Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the Tiniest Archaea, A Genomic Switch of Friend or Foe
