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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … and test a ribonuclease capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… activities catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … labs, as well as Pett-Ridge’s group, will assemble input materials, with eight or nine different teams then …
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Tanja Woyke Elected to American Academy of Microbiology
… honor,” said Axel Visel , JGI Deputy for Science Programs. “It clearly speaks to the enormous impact her … to have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to … with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation … Fellow. Reviewer for major funding agencies and journals including National Institutes of Health, American …
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Micro-Scale Applications Group
Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure … is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA …
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iPHoP: A Matchmaker for Phages and their Hosts
… nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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JGI Announces 2025 New Investigator Portfolio
… researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will … for this ongoing call; the next deadline for proposal submission is Sept. 9, 2025, for inclusion in the November …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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