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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the Wellcome … Trust Sanger Institute, UK and Lawrence Berkeley National Lab …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … features and functions. Making connections between the structures and functions of the genes encoded in the genome … that there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … of different entities,  further outlined in the journal  Nucleic Acids Research in November 2022.  One of GOLD’s …
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2021 Progress Report
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … for isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and … the project. The story is reposted here in modified format; their conversation has been lightly edited and condensed …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking … they’ve looked into wasps that program oak trees to raise their young in structures called galls.  In this episode, … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will bring together … microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by … (EcoFABs) designed for precise manipulation and reproducible experimentation of microbiome dynamics. Together, we …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing … cycling in diverse environments. In addition, this work reflects a collaboration between two programs within …
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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly … for researchers who study viruses that infect organisms much smaller than humans, like bacteria, this power is not …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make products such as proteins, and the mechanisms for maintenance to … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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