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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… compare their work consistently. And EcoFABs also work well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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Frequently Asked Questions: Project Management
… Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific question that …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in the future, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is … research, written skill, above all else, determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are invaluable pollinators — cupids of the plant world … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI & KBase at PAG XXVII
… XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … integrative biology. Researchers who are applying genomic sequence information to BER-funded activities of plant …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment … invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new … discovering that phenazine producers are enriched in the rhizosphere but also abundant everywhere in the earth’s …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … and press a button to build a model from our database of mappings between biochemical reactions and annotations. We … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … sustainable biofuel production. The JGI published a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 … self-training himself as a computational biologist. He spearheaded the manual curation of the Chlamydomonas genes. The …
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