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Neurospora intermedia from a traditional fermented food enables waste-to-food conversion
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … and structure following a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant … bacteria have all armed the plant with an array of defense mechanisms. The Impact There are over 10,400 species of …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … so researchers around the world would have better, easier access to these viral genomes. The new database was called … vein, characterizing CRISPR defense and anti-CRISPR mechanisms in a broader range of viral genomes would give …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also … interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct …
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … computational innovations, and other technological advancements that facilitate the shift from uncovering microbial … and single-cell sequence data have provided a means to access novel microbial lineages, leading to a new …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  Plant Program , both … to us for a decade? We believe this basic research has to occur in order to drive the research. Oftentimes, these …
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Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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Training the Next Generation of Talent
DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … be considered.” Olmstead’s project focused on the genetic mechanisms of chemotaxis in the Arabidopsis microbiome, … to the JGI-UC Merced Summer Internship Program for a successful launch this year, providing horizon-expanding …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … of the National Academy of Sciences bridges this gap, by tracing the evolution of a specific enzyme family called … kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would provide a …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … community brings together the data resources enabled by the DOE Biological and Environmental Research (BER) … in support of the DOE mission. Fermentative metabolism occurs in environments such as ruminant guts, sediments, and …
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The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants  
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JGI on the 2021 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … Santa Barbara, he and his colleagues found that anaerobic fungi from herbivore poop might be a new source of novel … Woyke appeared in a JGI Engagement Webinar on How to Successfully Apply for a CSP Proposal. She also co-organized …
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