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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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The Integrated Microbial Genome Resource of Analysis
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High-resolution phylogenetic microbial community profiling
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A Comparison of Microbial Genome Web Portals
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … structure of the protein related to its function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … ( 2017 ), have identified many more genes than found in the single reference genome, including traits useful for …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … go from start to finish, i.e., QC to separation to library sequencing and assembly. Like others, our turnaround time … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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Green Algae Reveal One mRNA Encodes Many Proteins
… eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral training at …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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