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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In … addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the … genes. It provides detailed functional annotations, protein homologs, plant family information, and a genome …
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Expanding Virophage Diversity
… share only four genes in common: major and minor capsid proteins (MCP and mCP, respectively), ATPase involved in DNA … in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …
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Integrating Experimentation with Data
… and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating … insightful presentations, dynamic panel discussions, informative poster sessions, thought-provoking flash talks, and instructive workshops. Researchers from academia, government, and industry, are …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered … establishing a professional presence through getting credit for any scientific contribution they make, whether as part … of a course or internship, and before ever publishing a research article. Speakers will highlight opportunities for …
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UC Merced Interns Reflect on Their JGI Summer Projects
… from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the … language processing techniques to categorize genetic information. Learn more about their work here in a series of … virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, Google …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … invested in being the bridge to help scientists and researchers achieve their analysis goals. Offering this tool … together and shredded up before sequencing, then computer algorithms stitch the pieces together and attempt to put …
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