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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … JGI Director Nigel Mouncey credits JGI Science Program Deputy Axel Visel for driving the monumental effort, …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … report of their work, supported through the Emerging Technologies Opportunity Program at the U.S. Department of Energy … first author of the study, the lysate produced BDO at higher productivity rates than were noted inside the cell. …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …
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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … and Opioid Addiction,” SC18: International Conference for High Performance Computing, Networking, Storage and … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan O’Malley , who leads the … approaches of Biotin DAP-seq and multiDAP allows for ultra high throughput discovery of transcription factor binding …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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The Case for Conservation
… purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … highlight the multiple advances in sequencing technologies applied to the effort. The Impact Found on all …
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A Complex Confection Decoded: Sugarcane Reference Genome
… researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … the genome required a custom pipeline and techniques. High quality primary assembly not only includes a full …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … strong bioeconomy. Summary Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … plants to transition to terrestrial life.  These led to highly detailed assemblies for three strains of  Zygnema …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11, 237 … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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