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DAP-seq Drives Robust Mapping of Gene Regulation
… gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource offering … across evolutionary time and diverse plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this … with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s availability to users is a …
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Making a Lichen Together
… to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could … Summary To shed light on lichen, an international team led by Daniele Armaleo, a biologist at Duke University, …
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JGI@25: Strengthening Soybean
… and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, … fuel and things like that are not going to be replaced by electricity anytime soon,” Stacey said when we caught up … to sequence — roughly 1.25 billion Gb (gigabasepairs — most fungi are around 50 million Mb, or megabases, in size). So, …
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Picking Up Threads of Cotton Genomics
… field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … and marketing company representing upland cotton funded by U.S. growers of upland cotton and importers of cotton and …
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Enlarging Windows into Understanding Gene Functions
… sequencing or DAP-seq. The technology was developed by Ronan O’Malley , who leads the Sequencing Technologies … November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo Baumgart and Juna Lee developed two … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and floods. The planet’s resources are being stretched by a growing human population and increasing demand for … despite drought conditions. The field experiment is led by a consortium involving researchers from the University of … relationship between plant roots and arbuscular mycorrhizal fungi (AMF), known to provide plants with nutrients and …
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Len Pennacchio
… in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from … Complete Publications Genomic Technologies Program Defining the vast … Selected Publications …
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Nikos Kyrpides
… Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Selected Publications …
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Nigel Mouncey
… and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, cosmetics and new crop … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for … for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… was a group lead at Stanford Human Genome Center directed by Richard Myers, and among the Center staff that moved to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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Axel Visel
… Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … LA, Visel A (2013). Fine tuning of craniofacial morphology by distant-acting enhancers. Science 342, 1241006. Visel A … Selected Publications …
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JGI@25: The Little Alga That Could
… 7,000 genes with other organisms (a third of those shared by both humans and flowering plants). Its genome also … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched …
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