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MAGI: A Method for Metabolite Annotation and Gene Integration
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TRIMER: Transcription Regulation Integrated with Metabolic Regulation
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … an incomplete picture of a virus, and for viruses that have integrated into the host genome, these sequences may be …
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Dan Rokhsar
… efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … Publications … Selected Publications …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … culmination of nearly a decade of work to develop genomic resources for drought tolerance in perennial grasses. The … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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A metagenomic perspective on the microbial prokaryotic genome census
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Overview of Laboratory Workflows for Microbial Single-Cell Genomics
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. …
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