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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science … genome for a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  … User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … fungi. Poplar is a  JGI Flagship Plant , of interest as a candidate  bioenergy feedstock . John McKay of Colorado …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The … those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial … User Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like … Office of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … A final recent advance in CRAGE is the addition of CRISPR enzyme Cas9. Originally, CRAGE was only used to  …
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Simple and Rapid Site-Specific Integration of Multiple Heterologous DNAs into the Escherichia coli Chromosome
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … to preserving peatlands in the face of a warming climate. Identifying these sex chromosomes and their role in …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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Expansion of the global RNA virome reveals diverse clades of bacteriophages
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? … powerful at finding ways to accelerate bio-design and identifying the best sets of enzymes that enable synthesis … of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their ability to redirect the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … the Department of Energy (DOE) also considers this to be a candidate bioenergy crop for its potential production of … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By …
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