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Murine colitis reveals a disease-associated bacteriophage community
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights … for food webs as they turn carbon dioxide and water into oxygen and sugars. How photosynthesis works, though, is much … work well in further experiments, so she could glean information about their specific function, filling in our …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … methane and organic matter.  However, to get all of the information that SIP offers, researchers must take on a fairly … around the world, the team have now published a  Minimum Information for any Stable Isotope Probing Sequence …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … compositions of these unique communities. SIP is an effective way of studying these communities. The process …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … fungi detect which complex chains are available; this information triggers pathways to determine which enzymes …
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Plant–microbiome interactions: from community assembly to plant health
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Genome-reconstruction for eukaryotes from complex natural microbial communities
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Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater
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The JGI announces 2024 awardees for our Community Science Program annual call
Adriana Corales, Hugh Cross, Megan DeMarche, Joanne Emerson, Matthew Hudson, Megan Keller and Julia Kelliher; [below] … Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, … large-scale genomic science projects relevant to the DOE’s Office of Biological and Environmental Research (BER) …
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