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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at … to. So, it allows us to be able to tease apart some of the mechanisms that regulate that response to drought through …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … glasses, or a cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature … water, and humans—around the world. By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest … be deconstructed without oxygen. Identifying the precise mechanisms by which these fungi break down lignin will … The authors acknowledge their funding sources: Office of Biological and Environmental Research of the U.S. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature … but also the ability to understand the complicated evolutionary history of strawberry in such detail is …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … in France and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By deciphering the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference … genomes and epigenomics, researchers are unwrapping complex mechanisms of genome-wide regulation and cataloging them in …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 … from previously understudied clades, establishing their evolutionary relationships and leading to the discovery of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … on green algae. “The Chlamy genome launched over a dozen of new Chlamydomonas genome-related Community Science Program …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … “When I originally envisioned the project of the class, I knew that I wanted them to write a final paper that  could be …
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