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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … virus sequences vary widely. In a previous effort, an international consortium recommended specific … annotation methods, it was possible to distinguish between metabolic genes found in the viral genome versus those from …
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously … peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and …
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Supporting Global Research into Actinomycetes
… special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … largest genus within Actinobacteria and therefore a cornerstone of ActinoBase,  a public platform built on the knowledge …
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Mission
… of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to … on the global carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … close, using RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of researchers likewise honed …
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi
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