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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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The BioMart community portal: an innovative alternative to large, centralized data repositories
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … developed and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory …
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