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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism
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Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium … his postdoctoral studies at the Carnegie Institution for Science where he studied the molecular basis of a plant …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … with sufficient resolution to analyze their structure. Scientists found both a gene likely important for sex … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s …
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Toward More Efficient Artificial Photosynthesis
… and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using … current natural processes and use it as a sustainable resource for making high-value bioproducts. As a step toward … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … for User Science (FICUS) initiative and used resources at the Environmental Molecular Sciences Laboratory …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest … Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …
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