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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … ecosystems. Viruses rarely grow well in environmental samples brought back to a lab, because they often need …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … from both plant cells and fungal cells. “Because this technology relies on just polyadenylated transcript capture …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… food webs in cold, but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … expedition to explore, collect and catalog samples, and look for patterns in algal communities, …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of … episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader perspective:  …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for … JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … with potential applications in industry and biotechnology for the production of  clean energy . Summary … to the process. This automation lets researchers study more samples and provides better resolution by splitting the DNA …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … lineages. The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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JGI User Executive Committee Expands
… of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback on … Area. He has partnered with the JGI through several user programs. He’s also bringing his fungal genetics expertise …
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A Complex Confection Decoded: Sugarcane Reference Genome
… now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s …
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