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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Trichoderma sp. strain AM6 whole-genome guided untargeted metabolomics: Terpenoid backbone synthesis and modulation of VOCs in tea (Camellia sinensis L.)
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Help from Citrus’ Bitter, Hardier Cousin
… that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … citrus, trifoliate orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Philympics 2021: Prophage Predictions Perplex Programs
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Game On: High School Students Drive Everglades Metagenomics Study
… class at Florida’s Boca Raton Community High School. The course had a defined set of objectives, and started with an … Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … Faculty Investigator at the HudsonAlpha Institute for Biotechnology Genome Sequencing Center and a member of the JGI … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… into a written report that is published in a scientific journal is the ultimate achievement. To get to this point … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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Boosting Small Molecule Production in Super “Soup”
… products at volumetric productivities greater than the source strains. (Blake Rasor) Think of cells as tiny … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … said. “We’re exploring not just what can be enabled by this technology, but also what we can understand through this …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … DSMZ overall, resulting not only in a valuable sequence resource to complement DSMZ’s vast strain resource, but also …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria and fungi have genes that can break … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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