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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Effects of Polar Light Cycle on Microbial Food Web
… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … other Antarctic lakes and the nearby Southern Ocean shift from phototrophs to archaea when sunlight becomes scant, Ace … dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles …
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Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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A synthesis of bacterial and archaeal phenotypic trait data
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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Toward a Data Infrastructure for the Plant Cell Atlas.
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AmiGO: online access to ontology and annotation data
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… large and giant. In a recent study  published in the journal  Nature , a team led by researchers at the U.S. … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Wisconsin-Madison, and the Georgia Institute of Technology focused on microbial communities from freshwater …
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Rex Malmstrom
… his postdoctoral work at the Massachusetts Institute of Technology he developed a high throughput approach for … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of …
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How to Target a Microbial Needle within a Community Haystack
… microbes from complex environmental samples. The Science A team led by researchers at the Max Planck … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was … Opportunity Program . The ETOP helps researchers develop technology that can then be made available to JGI users in …
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