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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… may have been important in early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …
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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi
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Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
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Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi
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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards … mission areas across the 6 Office of Science research programs. Among the recipients of the latest SCGSR award is … are developing cutting edge technologies to answer our most pressing problems. I’m very much looking forward to …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a …
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JGI Launches Latest Strategic Plan
… has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive … and incubation process. “JGI’s ‘vision’ is truly a tour de force,” said Mary Maxon, Biosciences Associate …
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User Executive Committee
… on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review procedures and the annual user …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… to the worldwide scientific community through its  User Programs on a competitive, peer-reviewed basis. Speakers and … a keynote speaker addressed the conference, sharing the journeys of their research careers, and showcasing the broad … of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced Bruce …
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