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Institutional User Agreements
… signing official must have the legal authority to commit your institution or organization to the terms and conditions … or Legal Representative. Please check with your unit director or supervisor for the appropriate contact … appointment, a version of the User Agreement between HHMI, your Host Institution and LBNL is required. NOTE:  If a PI …
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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … They play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel feedstocks. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … restoration and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … this set, the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal protein gene — were … standardized structure of the dataset position it as a resource for AI-driven approaches to predicting fungal …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … in nature. The research collaboration has been incredibly productive; more than 10 papers, including two Nature Plants …
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … New Mexico State University, the Environmental Molecular Sciences Laboratory and the U.S. Department of Energy (DOE) … Genome Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets … releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. … dubbed these viruses Altivir, finding them in three of the four subsurface ecosystems known to host Altiarchaea. The …
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Silver age of GOLD introduces new features
… Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine … with them. GOLD provides manually curated metadata resources for organisms and environmental samples. The database …
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource that could help researchers track cell development and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … to living on a changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary …
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Building Sphagnum Genomic Resources
… insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused … with methane oxidizing bacteria, nutrient uptake, and its productivity and decomposition rates. Peatlands, like other …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in the …
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