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Doubling Down on Known Protein Families
… cannot be cultivated in lab settings. Since each microbial community has its own unique makeup of microbe players and … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… releasing fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … the virions out and moving the carbon within the microbial community. These findings also suggest that lytic viruses … i.e., by Harald Huber and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more …
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Frederik Schulz
… cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz established a … of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) …
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Tanja Woyke Elected to American Academy of Microbiology
… One example, published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from … have scientists of Dr. Woyke’s caliber support the JGI User community in accessing our resources and help them to push the boundaries of energy …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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Model Fern Reveals Insight into DNA Thievery in Ferns
… secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications or … on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome … Research Systems (grant CARS-05 to S.C.); the Key R&D Program of Zhejiang Province (grant 2021C02009 to S.X.) and …
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Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium … genomics and metagenomics. They cited her “landmark” 2013 Nature paper , which uncovered nearly 30 major … Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … in activity as well; at any given time, many species in a community may be in ‘low power mode’, where they do very … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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