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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on these advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast windows into specific … provide granular insight into microbial functions, traits and competition, illuminating the inner workings of an … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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How Maize Makes An Antibiotic Cocktail
… enzymes are needed to transform zealexins and related precursors into a bonanza of diverse structures. The Impact … amenable to transfer into other plants because some of its enzymes can transform diverse terpene substrates into … Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided by …
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Triggering Morel Fruiting
… is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … system which allows the black morel to complete its lifecycle in an artificial environment. It is … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… local environments; for example, crop and ornamental seeds sold for the upper Midwest are often very different than … , we need to make connections between the plant’s traits and genetic diversity,” said John Lovell, an … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… far, the JGI has deployed CRAGE to successfully domesticate some 60 strains, inserting into them a genetic sequence that … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in … create compounds more efficiently than one strain could on its own.  In work published in  Synthetic Biology , the team …
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JGI on the 2020 Highly Cited Researchers List
… , Jane Grimwood , and  Jeremy Schmutz were part of a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature Biotechnology.  … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 … with University of California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and … the JGI celebrated the culmination of the fifth summer of its flagship education program with UC Merced. JGI Director …
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THE Bioenergy Tree
… tantalizing plants to harness for bioenergy. In this episode, hear from Oak Ridge National Laboratory scientists who … us closer to making poplar an economical and sustainable source of energy and materials. …
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An Automated Tool for Assessing Virus Data Quality
… computational approaches, more and more virus sequences are being recovered and identified from environmental samples … vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices … and often results in highly fragmented data, which limits the ability of researchers to accurately perform …
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JGI & KBase at PAG XXVII
Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from … activities of plant systems that make use of these resources will present on their work. BER Plant Genomic … and Transcriptomic Analyses for Bioprospecting in the Green Lineage using KBase 6:51 PM Evolution of Sex …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of … External Organizers: Jen Biddle, University of Delaware Eunsoo Kim, American Museum of Natural History Roland Hatzenpichler, Montana State University Maggie Sogin, UC Merced   …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship … and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large … which of the trees were turned on or off in response to its surroundings — illuminating the molecular mechanisms for …
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